Phatr49469 protein (Phaeodactylum tricornutum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Phatr49469

Predicted protein (522 aa)

Predicted Functional Partners:

Phatr16704

0.996

Phatr17408

0.996

Phatr51283

0.995

Phatr10566

0.994

Phatr51232

0.994

Phatr13192

0.989

Phatr45989

0.988

Phatrdraft1638

0.987

Phatr14572

0.978

Phatr13360

0.976

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Phatr10566	Phatr13192	Predicted protein	Predicted protein	0.729
Phatr10566	Phatr13360	Predicted protein	Predicted protein	0.598
Phatr10566	Phatr14572	Predicted protein	Predicted protein	0.706
Phatr10566	Phatr16704	Predicted protein	Predicted protein	0.997
Phatr10566	Phatr17408	Predicted protein	Predicted protein	0.997
Phatr10566	Phatr49469	Predicted protein	Predicted protein	0.994
Phatr10566	Phatr51232	Predicted protein	Predicted protein	0.995
Phatr10566	Phatr51283	Predicted protein	Predicted protein	0.995
Phatr10566	Phatrdraft1638	Predicted protein	Predicted protein	0.913
Phatr13192	Phatr10566	Predicted protein	Predicted protein	0.729
Phatr13192	Phatr13360	Predicted protein	Predicted protein	0.978
Phatr13192	Phatr14572	Predicted protein	Predicted protein	0.985
Phatr13192	Phatr16704	Predicted protein	Predicted protein	0.991
Phatr13192	Phatr17408	Predicted protein	Predicted protein	0.987
Phatr13192	Phatr45989	Predicted protein	Predicted protein	0.482
Phatr13192	Phatr49469	Predicted protein	Predicted protein	0.989
Phatr13192	Phatr51232	Predicted protein	Predicted protein	0.984
Phatr13192	Phatr51283	Predicted protein	Predicted protein	0.524
Phatr13192	Phatrdraft1638	Predicted protein	Predicted protein	0.991
Phatr13360	Phatr10566	Predicted protein	Predicted protein	0.598

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