STRINGSTRING
Phatr49500 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49500" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49500Predicted protein (1011 aa)    
Predicted Functional Partners:
Phatr41702
Predicted protein (671 aa)
     
   
  0.690
Phatr9709
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis (71 aa)
   
 
  0.689
ACPZ
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis (127 aa)
   
 
  0.689
Phatr17772
Predicted protein (1313 aa)
     
   
  0.587
Phatr47067
Predicted protein (1237 aa)
     
   
  0.552
CCL1
Coumaryl-coa ligase (523 aa)
       
  0.512
Phatr48666
Predicted protein (1643 aa)
       
  0.512
Phatr43214
Predicted protein (1657 aa)
       
  0.512
Phatr19324
Predicted protein (554 aa)
     
   
  0.495
Phatr8663
Predicted protein (187 aa)
       
 
  0.492
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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