STRINGSTRING
Phatr49508 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49508" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49508Predicted protein (317 aa)    
Predicted Functional Partners:
Phatr12925
Predicted protein (255 aa)
   
 
  0.767
Phatr33017
Predicted protein; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX (711 aa)
         
  0.531
Phatr19901
Predicted protein (900 aa)
         
  0.517
Phatr9046
Predicted protein (163 aa)
   
        0.492
Phatr8155
Predicted protein (102 aa)
   
        0.492
Phatr54560
Predicted protein (526 aa)
   
        0.479
Phatr54101
Predicted protein (471 aa)
   
        0.479
Phatr40691
Predicted protein (216 aa)
   
        0.479
Phatr26029
Predicted protein (478 aa)
   
        0.479
Phatr2171
Predicted protein (439 aa)
   
        0.479
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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