STRINGSTRING
Phatr49527 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49527" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49527Predicted protein (1089 aa)    
Predicted Functional Partners:
Phatr27246
Predicted protein (283 aa)
     
 
  0.963
Phatr44146
Predicted protein (285 aa)
     
 
  0.963
POLA
DNA polymerase (1147 aa)
     
 
  0.931
Phatr9344
Predicted protein (389 aa)
     
 
  0.891
Phatr981
Predicted protein (467 aa)
     
 
  0.792
MCM2
Predicted protein (808 aa)
     
 
  0.792
Phatr46806
Predicted protein (463 aa)
     
 
  0.777
MCM4
Predicted protein (791 aa)
     
 
  0.766
Phatr52678
DNA polymerase (2155 aa)
     
 
  0.762
MCM5
Predicted protein (667 aa)
     
 
  0.747
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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