STRINGSTRING
Phatr49544 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49544" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49544Predicted protein (329 aa)    
Predicted Functional Partners:
Phatr8860
Annotation not available (577 aa)
       
 
  0.543
Phatr49702
Predicted protein (959 aa)
       
 
  0.543
Phatr9794
Predicted protein (404 aa)
       
 
  0.526
Phatr43773
Predicted protein (398 aa)
       
 
  0.524
ACC2
Biotin carboxylase (2282 aa)
     
   
  0.496
Phatr48799
Predicted protein (892 aa)
       
 
  0.470
Phatr45518
Predicted protein (918 aa)
       
 
  0.470
Phatr1971
Predicted protein (492 aa)
       
 
  0.470
PTD9
Desaturase delta 9 desaturase (333 aa)
       
 
  0.415
Phatr45551
Predicted protein (535 aa)
           
  0.412
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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