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STRINGSTRING
Phatr49572 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49572" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49572Predicted protein (975 aa)    
Predicted Functional Partners:
Phatr31781
Predicted protein (379 aa)
     
 
  0.839
Rad22
Predicted protein (468 aa)
     
 
  0.839
Phatr54612
Ercc4-like protein (736 aa)
     
 
  0.835
Phatr14180
Predicted protein (545 aa)
   
   
 
0.814
Phatr45914
Predicted protein (746 aa)
     
 
  0.805
Phatr44708
Predicted protein (790 aa)
     
 
  0.801
Phatr47127
Predicted protein (517 aa)
     
 
  0.765
MRE11
Predicted protein (550 aa)
   
 
  0.761
Phatr13221
Predicted protein (208 aa)
     
 
  0.757
XPF
Excision repair cross-complementing rodent repair deficiency, complementation group 4 (975 aa)
     
 
  0.737
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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