STRINGSTRING
Phatr49595 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49595" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49595Predicted protein (643 aa)    
Predicted Functional Partners:
Phatr54869
Predicted protein (445 aa)
     
  0.683
Ran1
Predicted protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (213 aa)
     
  0.678
Ran2
Predicted protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (254 aa)
     
  0.678
Phatr8694
Predicted protein (63 aa)
       
 
  0.606
Phatr42770
Predicted protein (1086 aa)
     
  0.527
Phatr42712
Predicted protein (219 aa)
     
  0.527
H2A-m2
Histone H2A (138 aa)
       
  0.517
H2A-3a
Histone H2A (126 aa)
       
  0.517
H2A-m1
Histone H2A (138 aa)
       
  0.517
Phatr26802
Histone H2A (126 aa)
       
  0.517
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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