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sufD protein (Phaeodactylum tricornutum) - STRING interaction network
"sufD" - FeS assembly protein suf in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufDFeS assembly protein suf (690 aa)    
Predicted Functional Partners:
sufS
Cysteine desulfurase for iron-sulfur cluster formation suf (496 aa)
 
  0.939
Phatr7639
Predicted protein (124 aa)
   
 
  0.767
Phatr46641
Predicted protein (1036 aa)
   
  0.766
Phatr46105
Predicted protein (485 aa)
   
  0.766
Phatr45663
Predicted protein (356 aa)
   
  0.766
Phatr38946
Predicted protein (495 aa)
   
  0.766
Phatr14867
Predicted protein (88 aa)
   
 
  0.703
Phatr11154
Predicted protein (105 aa)
   
 
  0.703
Phatr7780
Predicted protein (122 aa)
   
 
  0.687
IscU
Iron-sulphur assembly protein isc; Scaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (160 aa)
       
  0.585
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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