STRINGSTRING
Phatr49638 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49638" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49638Predicted protein (611 aa)    
Predicted Functional Partners:
PAS2
Ubiquitin carrier protein (168 aa)
       
  0.766
Phatr36198
Ubiquitin carrier protein (163 aa)
       
  0.766
Phatr30092
Predicted protein (147 aa)
       
  0.766
UBC2
Ubiquitin carrier protein (147 aa)
       
  0.766
sUbi
Ubiquitin-like protein (268 aa)
       
  0.745
hUbi
Predicted proteinUbiquitin extension protein 4 (381 aa)
       
  0.745
Phatr49037
Predicted protein (205 aa)
       
  0.745
UBI3
Ubiquitin extension protein 3 (155 aa)
       
  0.729
Phatr10724
Predicted protein (169 aa)
       
  0.706
UBC1
Ubiquitin carrier protein (197 aa)
     
  0.699
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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