STRINGSTRING
Phatr49658 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49658" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49658Predicted protein (339 aa)    
Predicted Functional Partners:
P5CS
Delta l-pyrroline-5-carboxylate synthetase (747 aa)
   
   
  0.792
Phatr18027
Predicted protein (706 aa)
   
   
  0.792
Phatr19324
Predicted protein (554 aa)
         
  0.633
Phatr10902
Predicted protein (473 aa)
         
  0.593
Phatr30514
Predicted protein (351 aa)
         
  0.533
Phatr21116
Argininosuccinate synthase (418 aa)
         
  0.533
Phatr22113
Bifunctional aspartokinase (870 aa)
   
   
  0.512
PHATR_3140
Predicted protein (196 aa)
         
  0.504
Phatr24772
Predicted protein (801 aa)
         
  0.502
Phatr27735
Predicted protein (538 aa)
   
   
  0.499
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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