STRINGSTRING
Phatr49726 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49726" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49726Predicted protein (741 aa)    
Predicted Functional Partners:
Phatr83
Predicted protein (1164 aa)
   
0.650
Phatr21664
Predicted protein (1186 aa)
   
0.649
Phatr22629
Predicted protein (1367 aa)
   
0.647
Phatr21354
Predicted protein (422 aa)
       
    0.529
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
         
  0.450
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
         
  0.450
Phatr18693
Predicted protein (1351 aa)
       
 
  0.434
Phatr18197
Predicted protein (1168 aa)
       
 
  0.434
LPT1
1-acyl-sn-glycerol-3-phosphate acyltransferase (399 aa)
       
 
  0.412
Phatr42446
Predicted protein (315 aa)
       
 
  0.412
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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