Phatr49777 protein (Phaeodactylum tricornutum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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white nodes:
second shell of interactors

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filled nodes:
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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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Score

Phatr49777

Predicted protein (418 aa)

Predicted Functional Partners:

Phatrdraft598

0.556

Phatr43140

0.545

Phatr14736

0.451

Phatr48794

0.449

Phatrdraft1619

0.446

Phatr51714

0.446

Phatr51608

0.446

Phatr50252

0.446

Phatr48862

0.446

Phatr48100

0.446

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Phatr14736	Phatr43140	Predicted protein	Predicted protein	0.446
Phatr14736	Phatr49777	Predicted protein	Predicted protein	0.451
Phatr43140	Phatr14736	Predicted protein	Predicted protein	0.446
Phatr43140	Phatr48100	Predicted protein	Predicted protein	0.446
Phatr43140	Phatr48794	Predicted protein	Predicted protein	0.428
Phatr43140	Phatr48862	Predicted protein	Predicted protein	0.446
Phatr43140	Phatr49777	Predicted protein	Predicted protein	0.545
Phatr43140	Phatr50252	Predicted protein	Predicted protein	0.446
Phatr43140	Phatr51608	Predicted protein	2,5-diketo-D-gluconic acid reductase A-like protein	0.446
Phatr43140	Phatr51714	Predicted protein	Reductase with NAD or NADP as acceptor	0.446
Phatr43140	Phatrdraft1619	Predicted protein	Predicted protein	0.446
Phatr43140	Phatrdraft598	Predicted protein	Predicted protein	0.446
Phatr48100	Phatr43140	Predicted protein	Predicted protein	0.446
Phatr48100	Phatr48862	Predicted protein	Predicted protein	0.527
Phatr48100	Phatr49777	Predicted protein	Predicted protein	0.446
Phatr48100	Phatr50252	Predicted protein	Predicted protein	0.527
Phatr48100	Phatr51608	Predicted protein	2,5-diketo-D-gluconic acid reductase A-like protein	0.527
Phatr48100	Phatrdraft1619	Predicted protein	Predicted protein	0.527
Phatr48794	Phatr43140	Predicted protein	Predicted protein	0.428
Phatr48794	Phatr49777	Predicted protein	Predicted protein	0.449

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