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STRINGSTRING
Phatr49808 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49808" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49808Predicted protein (1718 aa)    
Predicted Functional Partners:
Phatr12028
Predicted protein (618 aa)
     
 
  0.907
Phatr51026
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily (426 aa)
     
 
  0.752
Phatr49800
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily (426 aa)
     
 
  0.752
Phatr45431
Histone deacetylase (1158 aa)
     
 
  0.712
Phatr8827
Predicted protein (219 aa)
       
 
  0.712
Phatr43517
Predicted protein (1255 aa)
     
 
  0.674
Phatr44453
Predicted protein (589 aa)
     
 
  0.670
Phatr24019
Predicted protein (414 aa)
     
 
  0.670
Phatr13057
Predicted protein (156 aa)
     
 
  0.670
Phatr13192
Predicted protein (74 aa)
     
      0.580
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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