STRINGSTRING
Phatr49836 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49836" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49836Predicted protein (667 aa)    
Predicted Functional Partners:
Phatr30638
Predicted protein (294 aa)
     
  0.996
Phatr13741
Predicted protein (147 aa)
     
  0.953
Phatr47390
Predicted protein (668 aa)
     
  0.940
Phatr47282
Predicted protein (610 aa)
         
    0.800
Arf1
Predicted protein (184 aa)
       
      0.611
Phatr54068
N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein (450 aa)
     
   
  0.460
SQD2
Glycosyl transferase, group 1 (507 aa)
     
   
  0.460
Phatr42467
Predicted protein (679 aa)
     
   
  0.460
DPM1
Dolichyl-phosphate mannosyltransferase (236 aa)
       
 
  0.446
Phatr18303
Mannosyl transferase (487 aa)
       
 
  0.445
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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