STRINGSTRING
Phatr49924 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49924" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49924Predicted protein (564 aa)    
Predicted Functional Partners:
Phatr1690
Predicted protein (495 aa)
       
  0.659
Phatr15968
Predicted protein (1387 aa)
   
 
    0.652
Phatr27735
Predicted protein (538 aa)
   
        0.652
Phatr2087
Thymidylate synthase (217 aa)
       
  0.641
Phatr31718
Inosine-5’-monophosphate dehydrogenase (468 aa)
   
   
  0.592
Phatr34898
Predicted protein (257 aa)
       
  0.572
Phatr26336
Predicted protein (179 aa)
       
  0.572
NRPS
Non ribosomal peptide synthase (1367 aa)
       
  0.570
Phatr17772
Predicted protein (1313 aa)
   
   
  0.537
Phatr45097
Predicted protein (233 aa)
 
          0.495
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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