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STRINGSTRING
Phatr50084 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50084" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50084Predicted protein (260 aa)    
Predicted Functional Partners:
Phatr22418
Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide (566 aa)
   
 
  0.863
Phatr14192
Predicted protein; Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family (311 aa)
   
 
  0.810
Phatr15852
Predicted protein (138 aa)
     
 
  0.764
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family (614 aa)
   
 
  0.681
Phatr38534
Predicted protein (204 aa)
     
 
  0.600
Phatr22388
Peroxiredoxin (233 aa)
     
 
  0.600
Phatr14898
Predicted protein (139 aa)
     
 
  0.600
SOD2
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (226 aa)
   
   
  0.583
SOD1
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (216 aa)
   
   
  0.583
Phatr21736
Predicted protein (192 aa)
   
 
  0.575
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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