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STRINGSTRING
Phatr50123 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50123" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50123Predicted protein (507 aa)    
Predicted Functional Partners:
Phatr47804
Predicted protein (94 aa)
     
 
  0.662
Phatr19314
Predicted protein (125 aa)
     
 
  0.642
Phatr23748
Predicted protein (67 aa)
     
 
  0.640
Phatr43840
Predicted protein (110 aa)
     
 
  0.630
Phatr21323
Predicted protein (137 aa)
     
 
  0.628
Phatr19413
Predicted protein; Belongs to the eukaryotic ribosomal protein eL38 family (69 aa)
     
 
  0.627
Phatrdraft477
Predicted protein (82 aa)
     
 
  0.624
Phatr51066
Predicted protein (152 aa)
     
 
  0.624
Phatr25714
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family (205 aa)
     
 
  0.621
Phatr19615
Predicted protein (121 aa)
     
 
  0.621
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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