STRINGSTRING
Phatr50135 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50135" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50135Predicted protein (626 aa)    
Predicted Functional Partners:
Phatr46994
Predicted protein (730 aa)
      
 
  0.835
Phatr45441
Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)
   
  0.779
Phatr9929
Predicted protein (196 aa)
   
  0.764
Phatr30019
Predicted protein (299 aa)
      
  0.701
BMS1
Ribosome biogenesis protein BMS1 (1096 aa)
      
 
  0.696
Phatr31725
Predicted protein (629 aa)
      
  0.681
Phatr13820
Predicted protein (282 aa)
      
  0.668
Phatr44555
Predicted protein (743 aa)
      
        0.667
Phatr21996
Predicted protein (417 aa)
   
   
  0.665
Phatr15862
Predicted protein (530 aa)
   
   
  0.665
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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