Phatr50135 protein (Phaeodactylum tricornutum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

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Score

Phatr50135

Predicted protein (626 aa)

Predicted Functional Partners:

Phatr46994

0.835

Phatr45441

0.779

Phatr9929

0.764

Phatr30019

0.701

BMS1

0.696

Phatr31725

0.681

Phatr13820

0.668

Phatr44555

0.667

Phatr21996

0.665

Phatr15862

0.665

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMS1	Phatr13820	Phatr42831	Phatr13820	Ribosome biogenesis protein BMS1	Predicted protein	0.974
BMS1	Phatr15862	Phatr42831	Phatr15862	Ribosome biogenesis protein BMS1	Predicted protein	0.847
BMS1	Phatr21996	Phatr42831	Phatr21996	Ribosome biogenesis protein BMS1	Predicted protein	0.847
BMS1	Phatr30019	Phatr42831	Phatr30019	Ribosome biogenesis protein BMS1	Predicted protein	0.728
BMS1	Phatr31725	Phatr42831	Phatr31725	Ribosome biogenesis protein BMS1	Predicted protein	0.828
BMS1	Phatr44555	Phatr42831	Phatr44555	Ribosome biogenesis protein BMS1	Predicted protein	0.959
BMS1	Phatr45441	Phatr42831	Phatr45441	Ribosome biogenesis protein BMS1	Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly	0.973
BMS1	Phatr46994	Phatr42831	Phatr46994	Ribosome biogenesis protein BMS1	Predicted protein	0.993
BMS1	Phatr50135	Phatr42831	Phatr50135	Ribosome biogenesis protein BMS1	Predicted protein	0.696
BMS1	Phatr9929	Phatr42831	Phatr9929	Ribosome biogenesis protein BMS1	Predicted protein	0.913
Phatr13820	BMS1	Phatr13820	Phatr42831	Predicted protein	Ribosome biogenesis protein BMS1	0.974
Phatr13820	Phatr15862	Phatr13820	Phatr15862	Predicted protein	Predicted protein	0.795
Phatr13820	Phatr21996	Phatr13820	Phatr21996	Predicted protein	Predicted protein	0.795
Phatr13820	Phatr30019	Phatr13820	Phatr30019	Predicted protein	Predicted protein	0.946
Phatr13820	Phatr31725	Phatr13820	Phatr31725	Predicted protein	Predicted protein	0.975
Phatr13820	Phatr44555	Phatr13820	Phatr44555	Predicted protein	Predicted protein	0.848
Phatr13820	Phatr45441	Phatr13820	Phatr45441	Predicted protein	Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly	0.952
Phatr13820	Phatr46994	Phatr13820	Phatr46994	Predicted protein	Predicted protein	0.941
Phatr13820	Phatr50135	Phatr13820	Phatr50135	Predicted protein	Predicted protein	0.668
Phatr13820	Phatr9929	Phatr13820	Phatr9929	Predicted protein	Predicted protein	0.992

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