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Phatr50138 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50138" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50138Predicted protein (1699 aa)    
Predicted Functional Partners:
SMC3
Predicted protein (1232 aa)
     
  0.983
Phatr44595
Mitotic cohesin (663 aa)
     
  0.938
SMC1
Predicted protein (1237 aa)
     
  0.930
Phatr54417
Cohesin (1455 aa)
     
  0.922
Phatr43362
Predicted protein (398 aa)
     
 
  0.691
Phatr48451
Separase protein (2039 aa)
     
 
  0.671
Phatr44165
Predicted protein (1356 aa)
     
   
  0.590
SMC6
Predicted protein (220 aa)
     
   
  0.570
Pt-MAD2
Mitotic checkpoint protein with homology with MAD2 (215 aa)
       
 
  0.541
SMC2
Predicted protein (1213 aa)
     
 
  0.522
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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