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STRINGSTRING
Phatr50212 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50212" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50212Predicted protein (314 aa)    
Predicted Functional Partners:
Phatr9894
Predicted protein (140 aa)
   
 
  0.676
Phatr9259
Predicted protein (92 aa)
   
 
  0.638
Phatr13682
Predicted protein (220 aa)
   
 
  0.605
Phatr19103
Predicted protein (102 aa)
   
 
  0.602
Phatr11799
Predicted protein (84 aa)
   
 
  0.602
Phatr51291
Predicted protein (121 aa)
   
 
  0.598
Phatr30486
Predicted protein; Belongs to the universal ribosomal protein uS13 family (146 aa)
     
 
  0.594
Phatr14915
Predicted protein (200 aa)
   
 
  0.593
Phatr23324
Predicted protein; Belongs to the universal ribosomal protein uL5 family (176 aa)
     
 
  0.581
rpl20
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (98 aa)
   
 
  0.580
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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