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STRINGSTRING
Phatr50221 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50221" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50221Predicted protein (745 aa)    
Predicted Functional Partners:
Phatrdraft955
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1674 aa)
     
 
  0.883
RNAP-II_1
Predicted protein (319 aa)
     
 
  0.869
Phatr9235
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1147 aa)
     
 
  0.866
Phatr12779
Predicted protein (89 aa)
       
 
  0.806
Phatr10199
Predicted protein (203 aa)
     
 
  0.660
Phatr10310
Predicted protein (85 aa)
     
 
  0.633
Phatr10148
Predicted protein (129 aa)
       
 
  0.589
Phatr22597
Predicted protein (149 aa)
     
 
  0.521
Phatr25420
Predicted protein (228 aa)
     
 
  0.477
Phatr13566
Predicted protein (320 aa)
     
 
  0.451
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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