STRINGSTRING
Phatr50229 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50229" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50229Predicted protein (520 aa)    
Predicted Functional Partners:
Phatr46460
Predicted protein (1448 aa)
     
  0.998
Phatr5546
Predicted protein (172 aa)
     
  0.788
Phatr4761
Predicted protein (163 aa)
     
  0.788
Phatr44042
Predicted protein (578 aa)
     
  0.788
Phatr42642
Predicted protein (696 aa)
     
  0.788
Phatr38270
Predicted protein (583 aa)
     
  0.788
Phatr15565
Predicted protein (168 aa)
     
  0.788
Phatr13309
Predicted protein (182 aa)
     
  0.788
Phatr23959
Predicted protein; Binds the poly(A) tail of mRNA (605 aa)
       
  0.588
Phatr54534
Predicted protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (451 aa)
       
      0.480
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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