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STRINGSTRING
Phatr50229 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50229" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50229Predicted protein (520 aa)    
Predicted Functional Partners:
Phatr46460
Predicted protein (1448 aa)
     
  0.998
Phatr23959
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA (605 aa)
     
 
  0.739
Phatr9576
Predicted protein (254 aa)
     
   
  0.732
Phatr50138
Sister chromatid cohesion protein (1699 aa)
     
      0.630
Phatr48873
Predicted protein (808 aa)
     
   
  0.596
Phatr45096
Predicted protein (765 aa)
     
   
  0.596
Phatr42429
Predicted protein (625 aa)
     
   
  0.596
Phatr43176
Predicted protein (464 aa)
     
   
  0.585
Phatr9231
Predicted protein (107 aa)
     
   
  0.445
Phatr5546
Predicted protein (172 aa)
     
 
  0.437
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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