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STRINGSTRING
Phatr50246 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50246" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50246Predicted protein (823 aa)    
Predicted Functional Partners:
Phatr46516
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1051 aa)
     
 
  0.998
Phatr45871
Predicted protein (944 aa)
     
 
  0.998
Phatr46837
Predicted protein (997 aa)
     
 
  0.997
Phatr46994
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA (730 aa)
   
 
  0.997
Phatr708
Predicted protein (511 aa)
     
 
  0.997
SAS1
Regulator of chromatin silencing (624 aa)
     
 
  0.996
Phatr11703
Predicted protein (820 aa)
     
 
  0.996
BMS1
Ribosome biogenesis protein BMS1 (1096 aa)
   
 
  0.995
Phatr46012
Predicted protein (2229 aa)
     
 
  0.992
Phatr14032
Predicted protein; Belongs to the DEAD box helicase family (467 aa)
     
 
  0.992
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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