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Phatr50253 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50253" - Cysteine protease in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50253Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy (557 aa)    
Predicted Functional Partners:
Phatr50303
Autophagy-related protein; Belongs to the ATG8 family (124 aa)
     
 
  0.971
Phatr41667
Autophagy-related protein 3 (302 aa)
     
 
  0.963
Phatr9342
Predicted protein (382 aa)
     
 
  0.959
Phatr31423
Predicted protein (357 aa)
     
 
  0.945
Phatr43913
Autophagy protein 5; Involved in autophagic vesicle formation (330 aa)
     
 
  0.920
Phatr36572
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle (955 aa)
     
   
  0.917
hCDK6
Predicted protein; Belongs to the protein kinase superfamily (258 aa)
     
 
  0.914
Phatr44051
Predicted protein (559 aa)
     
 
  0.914
Phatr49312
Predicted protein (1592 aa)
     
   
  0.903
Phatr45234
Predicted protein; Belongs to the peptidase C2 family (935 aa)
           
  0.852
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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