STRINGSTRING
Phatr50253 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50253" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50253Predicted protein (557 aa)    
Predicted Functional Partners:
Phatr50303
Predicted protein (124 aa)
     
  0.978
Phatr41667
Autophagy-related protein 3 (302 aa)
     
 
  0.812
hCDK6
Predicted protein (258 aa)
     
 
  0.769
Phatr43486
Predicted protein (416 aa)
     
 
  0.769
Phatr9342
Predicted protein (382 aa)
     
 
  0.641
Phatr49352
Predicted protein (1967 aa)
     
   
  0.587
Phatr16669
Predicted protein (263 aa)
     
   
  0.587
Phatr36142
Predicted protein (320 aa)
       
      0.542
Phatr36572
Predicted protein (955 aa)
     
   
  0.490
Phatr43913
Predicted protein; Involved in autophagic vesicle formation (330 aa)
     
 
  0.476
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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