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STRINGSTRING
Phatr50280 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50280" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50280Predicted protein (661 aa)    
Predicted Functional Partners:
SMC2
Structural maintenance of chromosomes protein (1213 aa)
     
 
  0.982
Phatr44765
Predicted protein (1353 aa)
     
 
  0.981
Phatr49507
Predicted protein (1564 aa)
     
 
  0.980
Phatr44165
Structural maintenance of chromosomes protein (1356 aa)
     
 
  0.967
Phatr36284
Predicted protein (924 aa)
     
   
  0.919
SMC3
Predicted protein (1232 aa)
     
 
  0.890
SMC
Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases (1271 aa)
     
 
  0.883
SMC5
Predicted protein (1099 aa)
     
 
  0.862
Phatr48922
Predicted protein (965 aa)
     
 
  0.842
Phatr44595
Mitotic cohesin (663 aa)
     
   
  0.838
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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