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Phatr50281 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50281" - Predicted protein in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50281Predicted protein (417 aa)    
Predicted Functional Partners:
FUM1
Precursor of fumarase fumarase (567 aa)
       
    0.912
Fum
Fumarate hydratase (462 aa)
       
  0.867
Phatr49112
Predicted protein (494 aa)
 
   
  0.855
SDH1
Succinate dehydrogenase flavoprotein; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q) (638 aa)
   
 
    0.818
SDH2
Succinate dehydrogenase iron sulfur protein; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q) (273 aa)
   
 
    0.808
Phatr10356
Succinate dehydrogenase cytochrome b subunit (125 aa)
         
    0.800
Phatr6848
Predicted protein (125 aa)
   
 
  0.654
Phatr8445
Predicted protein (67 aa)
       
      0.632
Phatr42828
Predicted protein (499 aa)
       
      0.632
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
      0.584
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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