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STRINGSTRING
Phatr50310 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50310" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50310Predicted protein (699 aa)    
Predicted Functional Partners:
Phatr13192
Predicted protein (74 aa)
     
      0.839
Phatr14572
Predicted protein (219 aa)
     
 
  0.763
Phatr8828
Predicted protein (291 aa)
           
  0.582
Phatr16704
Predicted protein (1045 aa)
     
   
  0.573
Phatr47886
Predicted protein (528 aa)
     
        0.537
Phatr43109
Predicted protein (255 aa)
     
      0.516
Phatr46169
Predicted protein (520 aa)
     
      0.459
Phatr43211
Predicted protein (826 aa)
     
 
  0.453
Phatr45524
Predicted protein (805 aa)
     
 
  0.434
SMC3
Predicted protein (1232 aa)
     
   
  0.402
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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