STRINGSTRING
SQD2 protein (Phaeodactylum tricornutum) - STRING interaction network
"SQD2" - Glycosyl transferase, group 1 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SQD2Glycosyl transferase, group 1 (507 aa)    
Predicted Functional Partners:
SQD1
UDP-sulfoquinovose synthase, plastid (456 aa)
 
 
  0.948
Phatr14125
Monogalactosyldiacylglycerol synthase (394 aa)
       
  0.931
Phatr9794
Predicted protein (404 aa)
     
 
    0.912
Phatr43773
Predicted protein (398 aa)
     
 
    0.900
Phatr1971
Predicted protein (492 aa)
       
    0.900
Phatr8860
Annotation not available (577 aa)
         
    0.900
Phatr43856
Predicted protein (985 aa)
         
    0.900
Phatr43469
Predicted protein (320 aa)
         
    0.900
Phatr14202
Predicted protein (312 aa)
         
    0.900
Phatr19324
Predicted protein (554 aa)
       
  0.727
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (6%) [HD]