• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr50392 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50392" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50392Predicted protein (153 aa)    
Predicted Functional Partners:
Phatr40430
Dihydrolipoamide succinyltransferase (377 aa)
 
  0.784
SCS-alpha
Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate- level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit (309 aa)
   
 
  0.680
Phatr45557
Predicted protein (253 aa)
   
 
  0.640
SDH2
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q) (273 aa)
 
   
  0.583
Phatr26921
Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate- level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit (443 aa)
   
 
  0.576
Phatr30145
Citrate synthase; Belongs to the citrate synthase family (471 aa)
   
   
  0.574
Fum
Fumarate hydratase (462 aa)
   
   
  0.556
DHLTA_4
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; Dihydrolipoamide acetyl transferase (525 aa)
   
 
  0.551
MDH
Predicted protein; Belongs to the LDH/MDH superfamily (324 aa)
   
   
  0.486
ACL
Atp-citrate synthase; In the N-terminal section; belongs to the succinate/malate CoA ligase beta subunit family (1082 aa)
   
 
  0.471
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (9%) [HD]