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STRINGSTRING
Phatr50401 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50401" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50401Predicted protein (935 aa)    
Predicted Functional Partners:
Phatr11126
Predicted protein (513 aa)
   
 
  0.896
GluRS_2
Glutamyl-trna synthase; Belongs to the class-I aminoacyl-tRNA synthetase family (588 aa)
   
 
  0.709
GluRS_1
Glutamate-trna ligase; Belongs to the class-I aminoacyl-tRNA synthetase family (523 aa)
   
 
  0.655
Phatr41702
Predicted protein (671 aa)
         
  0.533
Phatr8755
Predicted protein (501 aa)
   
 
  0.515
Phatr42247
Predicted protein (467 aa)
   
 
  0.515
Phatr35101
Predicted protein (570 aa)
         
  0.453
Phatr38509
Arginase; Belongs to the arginase family (301 aa)
   
   
  0.420
Phatr27385
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (697 aa)
   
 
  0.405
Phatr16963
Glutaminyl-trna synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family (568 aa)
   
 
  0.405
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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