STRINGSTRING
Phatr50428 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50428" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50428Predicted protein (816 aa)    
Predicted Functional Partners:
Phatr9413
Predicted protein (325 aa)
     
  0.822
Phatr3730
Predicted protein (300 aa)
     
  0.822
Phatr36721
Predicted protein (323 aa)
       
  0.797
Phatr11631
Predicted protein (300 aa)
   
  0.774
Phatr10865
Predicted protein (323 aa)
   
  0.774
Phatr5235
Predicted protein (263 aa)
   
  0.765
Phatr3120
Predicted protein (241 aa)
   
  0.765
Phatr12655
Predicted protein (260 aa)
   
  0.765
Phatr11563
Predicted protein (238 aa)
   
  0.765
Phatr10848
Predicted protein (261 aa)
   
  0.765
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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