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STRINGSTRING
Phatr50442 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50442" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50442Predicted protein (196 aa)    
Predicted Functional Partners:
Phatr21791
Predicted protein (208 aa)
     
0.855
Arf1
Predicted protein; Belongs to the small GTPase superfamily. Arf family (184 aa)
     
 
  0.742
Phatr42942
Predicted protein (1474 aa)
     
 
  0.501
COPgamma
Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (910 aa)
     
 
  0.472
Phatr8461
Predicted protein (53 aa)
     
 
0.456
ARL1
Predicted protein; Belongs to the small GTPase superfamily. Arf family (184 aa)
     
 
  0.454
Phatr17860
Predicted protein (253 aa)
 
 
        0.451
CHC
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1702 aa)
     
 
  0.445
Phatr12431
Predicted protein (801 aa)
     
 
  0.444
Phatr54143
Predicted protein (1695 aa)
     
 
  0.439
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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