STRINGSTRING
Phatr50446 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50446" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50446Predicted protein (1157 aa)    
Predicted Functional Partners:
Phatr32759
Predicted protein (879 aa)
     
  0.983
Phatr14850
Predicted protein (653 aa)
     
  0.977
Phatr45698
Predicted protein (908 aa)
       
  0.835
Rab6
Predicted protein (236 aa)
       
  0.666
Phatr43498
Predicted protein (807 aa)
     
 
  0.642
Phatr43008
Predicted protein (629 aa)
     
  0.626
SytB
Predicted protein (260 aa)
       
  0.599
Phatr44715
Predicted protein (786 aa)
     
 
  0.596
Phatr8918
Predicted protein (190 aa)
       
 
  0.566
ARL1
Predicted protein (184 aa)
       
  0.540
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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