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STRINGSTRING
Phatr50465 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50465" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50465Predicted protein (989 aa)    
Predicted Functional Partners:
Phatr26750
Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (153 aa)
     
 
  0.981
Phatr38931
Predicted protein (1031 aa)
     
 
  0.913
Phatr16875
Predicted protein (164 aa)
     
 
  0.908
Phatr42758
Predicted protein (1346 aa)
     
   
  0.890
Phatr46600
Predicted protein (459 aa)
     
 
  0.870
Phatr44745
Ubiquitinyl hydrolase 1 (1075 aa)
     
 
  0.863
Phatr28743
Predicted protein (203 aa)
     
 
  0.860
H2A-m1
Histone H2A (138 aa)
     
 
  0.830
Phatr18239
Predicted protein (1058 aa)
     
 
  0.828
Phatr47879
Predicted protein (1958 aa)
     
 
  0.823
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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