STRINGSTRING
Phatr50489 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50489" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50489Predicted protein (387 aa)    
Predicted Functional Partners:
Pt-MAD2
Mitotic checkpoint protein with homology with MAD2 (215 aa)
      
  0.990
Phatr10954
Predicted protein (209 aa)
      
  0.989
Pt-BUB3
WD40 mitotic checkpoint-like protein similar to spleen mitotic checkpoint BUB3 (397 aa)
      
  0.983
Phatr45008
Predicted protein (480 aa)
      
 
  0.964
Phatr12339
Predicted protein (275 aa)
      
 
  0.964
Pt-MAD1
Mitotic spindle assembly checkpoint protein (1315 aa)
        
  0.915
Phatr43664
Predicted protein (655 aa)
      
  0.906
Pt-KIF3
Kinesin family-like protein (953 aa)
      
  0.881
Phatr10628
Predicted protein (575 aa)
      
0.860
H3-1a
Histone H3 (136 aa)
      
  0.836
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (10%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >