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STRINGSTRING
Phatr50559 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50559" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50559Predicted protein (390 aa)    
Predicted Functional Partners:
atpB
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane (501 aa)
     
 
  0.864
Phatr12106
Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family (170 aa)
     
 
  0.809
Phatrdraft1384
SURF1-like protein; Probably involved in the biogenesis of the COX complex (343 aa)
     
   
  0.805
Phatr6580
Predicted protein (191 aa)
       
 
  0.801
Phatr21354
Predicted protein (422 aa)
     
   
  0.798
Phatr43913
Autophagy protein 5; Involved in autophagic vesicle formation (330 aa)
     
 
  0.793
Phatr50253
Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy (557 aa)
     
   
  0.779
Phatr9342
Predicted protein (382 aa)
     
   
  0.776
Phatr41667
Autophagy-related protein 3 (302 aa)
           
  0.776
Phatr50303
Autophagy-related protein; Belongs to the ATG8 family (124 aa)
           
  0.766
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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