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Phatr50624 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50624" - Putative uncharacterized protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50624Putative uncharacterized protein (603 aa)    
Predicted Functional Partners:
Phatr52285
Cleavage and polyadenylation specific factor (1001 aa)
     
  0.998
Phatr42753
Predicted protein (1678 aa)
     
  0.998
Phatr28482
Predicted protein (602 aa)
     
  0.996
PAF1
PolyAdenylation factor subunit 1 (402 aa)
     
  0.995
Phatr13834
Predicted protein (172 aa)
       
  0.994
Phatr45697
Predicted protein (1067 aa)
     
  0.985
Phatr47826
Predicted protein (777 aa)
     
  0.977
Phatr12234
GABAR1 G protein-coupled GABA receptor (421 aa)
     
  0.977
Phatr8451
Predicted protein (76 aa)
     
  0.977
Phatr28743
Predicted protein (203 aa)
     
 
  0.970
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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