STRINGSTRING
Phatr50806 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50806" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50806Predicted protein (588 aa)    
Predicted Functional Partners:
Phatrdraft1682
Anthranilate synthase (927 aa)
   
 
  0.879
Phatr17238
Anthranilate synthase (958 aa)
   
 
  0.879
Phatr12107
Predicted protein (460 aa)
       
  0.872
Phatr20547
Homeobox protein (646 aa)
   
  0.819
Phatr24772
Predicted protein (801 aa)
   
   
  0.812
Phatr27735
Predicted protein (538 aa)
       
  0.750
Phatr22113
Bifunctional aspartokinase (870 aa)
   
 
  0.745
Phatr54355
Carboxylyase (667 aa)
   
  0.738
Phatr37341
Annotation not available (628 aa)
   
  0.738
PHATR_3140
Predicted protein (196 aa)
         
  0.702
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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