STRINGSTRING
Phatr50825 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50825" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50825Predicted protein (451 aa)    
Predicted Functional Partners:
Phatr19568
Predicted protein (485 aa)
   
0.994
Phatr45548
Predicted protein (613 aa)
     
  0.979
Phatr45153
Predicted protein (523 aa)
     
  0.919
ARP
Actin related protein (463 aa)
     
  0.919
Phatr3281
Predicted protein (354 aa)
     
 
  0.904
Phatr21660
Predicted protein (2400 aa)
       
  0.834
Phatr20773
Predicted protein (484 aa)
     
  0.819
Phatr11965
Predicted protein (194 aa)
     
  0.819
Phatr6586
Predicted protein (152 aa)
     
  0.801
Phatr19552
Predicted protein (529 aa)
     
 
  0.795
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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