STRINGSTRING
Phatr50885 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr50885" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr50885Predicted protein (602 aa)    
Predicted Functional Partners:
Phatr29824
Predicted protein (1177 aa)
   
 
  0.895
GluRS_1
Glutamate-trna ligase (523 aa)
   
 
  0.865
Phatr27385
Predicted protein (697 aa)
   
 
  0.778
Phatr16963
Glutaminyl-trna synthetase (568 aa)
   
 
  0.778
Phatr33493
Predicted protein (684 aa)
     
 
  0.735
Phatr18524
Predicted protein (766 aa)
     
 
  0.735
Phatr43097
Predicted protein (671 aa)
     
 
  0.720
Phatr23547
Predicted protein (479 aa)
     
 
  0.720
Phatr30572
Predicted protein (462 aa)
     
   
  0.712
Phatr15374
Predicted protein (442 aa)
     
   
  0.712
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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