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STRINGSTRING
Phatr51005 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr51005" - DNA ligase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr51005DNA ligase (651 aa)    
Predicted Functional Partners:
Phatr1690
Predicted protein (495 aa)
     
   
  0.966
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
 
  0.943
Phatr54992
DNA primase; Belongs to the eukaryotic-type primase small subunit family (458 aa)
     
   
  0.887
Phatr54677
DNA polymerase (1087 aa)
     
 
  0.867
POLA
DNA polymerase (1147 aa)
     
 
  0.863
Phatr45914
Predicted protein (746 aa)
     
 
  0.837
Phatr52678
DNA polymerase (2155 aa)
     
 
  0.829
Phatr47127
Predicted protein (517 aa)
     
 
  0.818
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a [...] (421 aa)
     
 
  0.796
Phatr46971
Predicted protein (696 aa)
     
 
  0.796
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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