STRINGSTRING
Phatr51026 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr51026" - Histone deacetylase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr51026Histone deacetylase (426 aa)    
Predicted Functional Partners:
NURF-55
Chromatin assembly factor subunit c (466 aa)
      
  0.979
Phatr24019
Predicted protein (414 aa)
      
  0.955
Phatr13057
Predicted protein (156 aa)
      
  0.955
H3-1a
Histone H3 (136 aa)
     
  0.889
Phatr50695
Histone H3 (136 aa)
     
  0.889
H3.3
Histone H3 (136 aa)
     
  0.889
Phatr16843
Histone H3 (104 aa)
     
  0.889
Phatr11841
Histone H3 (136 aa)
     
  0.889
H2B-1a
Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (116 aa)
        
  0.879
Phatr11823
Histone H2B (116 aa)
        
  0.879
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (12%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >