• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr5104 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr5104" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr5104Predicted protein (251 aa)    
Predicted Functional Partners:
Phatr11248
Predicted protein (167 aa)
     
   
  0.767
Phatr27039
Predicted protein (634 aa)
     
 
  0.690
Phatr46215
Predicted protein (297 aa)
     
 
  0.678
Phatr32237
Predicted protein (259 aa)
     
 
  0.665
Phatr15472
Predicted protein (201 aa)
     
   
  0.632
DPM1
Dolichyl-phosphate mannosyltransferase (236 aa)
     
 
  0.620
Phatr42274
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi (194 aa)
     
   
  0.586
Arf1
Predicted protein; Belongs to the small GTPase superfamily. Arf family (184 aa)
     
 
  0.556
Phatr18533
Predicted protein (172 aa)
     
 
  0.542
Phatr48220
Predicted protein (1041 aa)
     
   
  0.524
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (7%) [HD]