STRINGSTRING
Phatr51040 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr51040" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr51040Predicted protein (607 aa)    
Predicted Functional Partners:
Phatr44708
Predicted protein (790 aa)
     
0.961
Phatr33013
Predicted protein (571 aa)
     
  0.902
Phatr45914
Predicted protein (746 aa)
       
  0.847
Phatr48206
Predicted protein (794 aa)
     
  0.841
Phatr46734
Predicted protein (894 aa)
     
  0.841
MRE11
Predicted protein (550 aa)
     
  0.837
Phatr15031
Predicted protein (118 aa)
     
  0.798
RPA1
Replication protein a large 70 kD subunit (606 aa)
       
  0.783
RAD50
RAD50 recombination protein (1436 aa)
     
  0.772
Phatr51005
DNA ligase (651 aa)
     
 
  0.767
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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