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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
SybF protein (Phaeodactylum tricornutum) - STRING interaction network
"SybF" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SybFPredicted protein; Belongs to the synaptobrevin family (200 aa)    
Predicted Functional Partners:
Phatr40521
Predicted protein (203 aa)
     
  0.992
GOS
Predicted protein (223 aa)
     
 
  0.982
Phatr13691
Predicted protein (121 aa)
     
 
  0.977
SytB
Predicted protein; Belongs to the syntaxin family (260 aa)
     
 
  0.965
Memb11
Predicted protein (205 aa)
     
 
  0.962
Phatr31559
Predicted protein (297 aa)
     
 
  0.959
SLY1
Predicted protein; Belongs to the STXBP/unc-18/SEC1 family (648 aa)
     
 
  0.953
SNAP
Predicted protein (313 aa)
     
 
  0.928
Phatr9033
annotation not available (268 aa)
     
 
  0.915
Phatr48149
Predicted protein (380 aa)
     
 
  0.915
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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