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PEPCase_2 protein (Phaeodactylum tricornutum) - STRING interaction network
"PEPCase_2" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEPCase_2Predicted protein (877 aa)    
Predicted Functional Partners:
PPdK
Predicted protein (1011 aa)
         
  0.963
PK6
Pyruvate kinase (553 aa)
         
  0.955
MDH
Predicted protein (324 aa)
         
  0.953
PYC2
Precursor of carboxylase pyruvate carboxylase (1264 aa)
       
  0.947
PK3
Pyruvate kinase (543 aa)
         
  0.944
PK2
Pyruvate kinase (513 aa)
         
  0.944
PK5
Pyruvate kinase (543 aa)
         
  0.944
PYC1
Precursor of carboxylase pyruvate carboxylase (1252 aa)
       
  0.924
Phatr30145
Citrate synthase (471 aa)
     
 
  0.917
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
     
   
  0.898
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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