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STRINGSTRING
Rab5a protein (Phaeodactylum tricornutum) - STRING interaction network
"Rab5a" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab5aPredicted protein (201 aa)    
Predicted Functional Partners:
Phatr30282
Predicted protein; Belongs to the PI3/PI4-kinase family (341 aa)
     
  0.889
Phatr43641
Predicted protein (617 aa)
     
 
  0.840
RabGDI
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family (446 aa)
     
 
  0.808
Phatr43103
Predicted protein (1740 aa)
       
 
  0.714
Phatr47275
Predicted protein (1055 aa)
       
 
  0.708
Phatr44037
Predicted protein (1291 aa)
       
 
  0.704
Phatr46588
Predicted protein (1225 aa)
     
 
  0.695
VPS45
Predicted protein; Belongs to the STXBP/unc-18/SEC1 family (555 aa)
     
 
  0.693
Phatr43038
Predicted protein (1112 aa)
       
 
  0.690
Phatr42975
Predicted protein; Belongs to the STXBP/unc-18/SEC1 family (689 aa)
     
 
  0.688
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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