STRINGSTRING
cc1 protein (Phaeodactylum tricornutum) - STRING interaction network
"cc1" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cc1Predicted protein (316 aa)    
Predicted Functional Partners:
Phatrdraft972
Ammonium_transporter (540 aa)
           
  0.424
Phatr54981
Predicted protein (539 aa)
           
  0.424
Phatr27877
Predicted protein (521 aa)
           
  0.424
Phatr1862
Predicted protein (431 aa)
           
  0.424
Phatr1813
Predicted protein (433 aa)
           
  0.424
Phatr13418
Predicted protein (437 aa)
           
  0.424
Phatr11128
Predicted protein (441 aa)
           
  0.424
Phatr10881
Predicted protein (434 aa)
           
  0.424
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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