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STRINGSTRING
Phatr51528 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr51528" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr51528Predicted protein (377 aa)    
Predicted Functional Partners:
Phatr26952
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX (421 aa)
   
   
  0.855
Phatr5720
Predicted protein (204 aa)
         
  0.682
hemC
Hydroxymethylbilane synthase (329 aa)
   
   
  0.658
Phatr50848
Elongator complex protein 3; Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (544 aa)
 
 
   
  0.647
Phatr41746
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family (345 aa)
   
   
  0.639
HemD
Uroporphyrinogen-iii synthase (296 aa)
   
   
  0.638
HemA
Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family (512 aa)
         
  0.635
Phatr12925
Predicted protein; Belongs to the precorrin methyltransferase family (255 aa)
   
   
  0.614
PPO
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX (520 aa)
         
  0.609
Phatr11990
Predicted protein (330 aa)
   
   
  0.599
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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