STRINGSTRING
Phatr51609 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr51609" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr51609Predicted protein (529 aa)    
Predicted Functional Partners:
Phatrdraft913
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (386 aa)
   
 
  0.941
Phatr25000
Predicted protein; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene) (221 aa)
       
  0.934
Phatr13175
Predicted protein (391 aa)
     
 
  0.908
Phatr22113
Bifunctional aspartokinase (870 aa)
   
  0.902
METH
Methionine synthase (1245 aa)
       
  0.901
TYR1
Tyrosinase (546 aa)
         
    0.900
AAT_2
Aspartate aminotransferase (426 aa)
   
  0.888
AAT_1
Aspartate transaminase (435 aa)
   
  0.888
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
   
  0.887
Phatr24739
Predicted protein (1594 aa)
   
  0.887
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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